Protein Data Bank

When searching DDC on the PDB site I:

1) entered DDC in search bar and clicked search icon

2) scrolled down and clicked homo sapiens

3) chose second protein hit (Crystal structure of Human aromatic L-amino acid decarboxylase (AADC) in the apo form)

4) clicked 3D view on right under protein image 3D View

5) played around with settings

The following image was generated with the custom view option style set to “trace” and color set to “by amino acid”

Protein Sequence Prediction

I copy and pasted the nucleotide sequence (from NCBI) into the GENSCAN server to generate a predicted protein sequence. I then blasted the protein sequence I got from NCBI site against the protein sequence generated from GENSCAN.

The Blast alignment revealed a 100% sequence identity.

I then pasted the nucleotide sequence from NCBI into the Augustus site to generate a predicted protein sequence. I then blasted the protein sequence from NCBI against the sequence from Augustus.

The Blast alignment revealed a 100% sequence identity.

b2gof14:students:taynick:21oct2014

b2gof14/students/taynick/14oct2014.txt · Last modified: 2014/10/20 09:28 by taynick
 
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