Assignment: eukaryotic genome assembly

For the eukaryotic genome assembly exercise, we practiced assembling the genome of the paper wasp with 2 reduced (digitally normalized) libraries. Once you have successfully completed the exercise and are comfortable with eukaryotic genome assembly, please revisit the task and see what improvements you can achieve with all 5 libraries. These libraries are available on Mason or from the iPlant data store: see below. Note: for this assignment you should not skip quality control.

# Files on Mason
ls /N/dc2/scratch/dstandag/pdom-gdna/
 
# Files on iPlant
ils /iplant/home/standage/CGS/euk-asmbl
cgss15/genome-assembly/assignment-euk.txt · Last modified: 2015/03/23 09:14 by standage
 
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