Directory structure for http://gremlin1.gdcb.iastate.edu/~volker/SB05B/

 SBO5B - this directory
   |
   | -- BSSM4GSQ - source code for BSSM4GSQ, a package for preparing BSSM
   |      training data and parameters
   |
   | -- misc - contains source for mutseqer, which randomly mutates
   |      Fasta-formatted nucleotide sequences
   |
   | -- original_alignments - contains the original GeneSeqer-derived
   |      cDNA spliced alignments used to produce GC-AG BSSM parameters
   |
   | -- test_alignments - contains spliced alignments generated by the
   |      various programs assayed for competence on known gene structures
   |
   | -- test_data - contains the genomic sequences and associative
   |      pseudotranscripts for the known gene structures used to assess
   |      spliced alignment programs
   |
   | -- unannotated_GCAG - a list of GC-AG introns we identified in
   |      Arabidopsis thaliana that were not identified in the current
   |      annotation available at TAIR and TIGR