Bioinformatics2go

What's New


Group:

We have moved from Iowa State University (Ames, IA) to Indiana University (Bloomington, IN). Thank you ISU for providing a home for almost 14 years. Part of the group will continue at ISU for now, while new folks will join our efforts at IUB. Collaborations will flourish beyond that with our many valued colleagues and friends in Ames. Onward!

Recent publications:

Standage, D.S. & Brendel, V.P. (2012) ParsEval: parallel comparison and analysis of gene structure annotations. BMC Bioinformatics 13, 187. [PubMed ID: 22852583] [online article] [PDF]

Doyle, E.L., Booher, N.J., Standage, D.S., Voytas, D.F., Brendel, V.P., VanDyk, J.K. & Bogdanove, A.J. (2012) TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction. Nucl. Acids Res., 2012; doi: 10.1093/nar/gks608. [PubMed ID: 22693217] [online article] [PDF]

PlantGDB News:

plantgdb.org has moved to our new server at IU on Monday, July 23!

Bioinformatics2go

GeneSeqer



Description: A spliced alignment tool.

Citation: Brendel, V., Xing, L. & Zhu, W. (2004) Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics 20, 1157-1169. [PubMed ID: 14764557] [PDF]

Web Implementations: GeneSeqer @ USD GeneSeqer @ PlantGDB

Download: Download GeneSeqer