Raborn, R.T., Spitze, K., Brendel, V.P. & Lynch, M. (2016)
Promoter architecture and sex-specific gene expression in Daphnia pulex.
[Early online: 31 August 2016]
Duvick, J., Standage, D.S., Merchant, N. & Brendel, V.P. (2016)
xGDBvm: A Web GUI-driven workflow for annotating eukaryotic genomes in the cloud.
The Plant Cell
Standage, D.S., Berens, A.J., Glastad, K.M., Severin, A.J., Brendel, V.P. & Toth, A.L. (2016)
Genome, transcriptom and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylaiton system in a social insect.
The Brendel Group provides domain expertise to advise the Jetstream national science and engineering cloud project.
V. Brendel serves on the CyVerse External Advisory Board.
V. Brendel serves as Consulting Editor of The Plant Cell.
xGDBvm on YouTube
: SAPS stands for Statistical Analysis of Protein Sequences, and SSPA is an acronym for Significant Segment Pair Alignment. These programs are rather old (see citations), but still in use. I am making the old code available as is for now, hoping for some time soon to update the code. In the meantime, give me feedback and suggestions! Volker Brendel
, December 16, 2008.
: SAPS - Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA
89, 2002-2006. [PubMed ID: 1549558
]; SSPA - Karlin, S., Weinstock, G. & Brendel, V. (1995) Bacterial classifications derived from RecA protein sequence comparisons. J. Bacteriol.
177, 6881-6893. [PubMed ID: 7592482
: SAPS @ EBI
; SAPS @ Mobyle
: Download SAPS-SSPA