Jon Duvick interviewed by HPCwire!
Rauch, H.B., Patrick, T.L., Klusman, K.M., Battistuzzi, F.U., Mei, W,. Brendel, V.P. & Lal, S.K. (2013)
Discovery and Expression Analysis of Alternative Splicing Events Conserved among Plant SR Proteins.
Mol. Biol. Evol.,doi: 10.1093/molbev/mst238 First published online: December 19, 2013.
[PubMed ID: 24356560]
[online article (corrected proof)]
[PDF (Advance Access)]
Yi, G., Brendel, V.P., Shu, C., Li, P., Palanathan, S. & Kao, C.C. (2013)
Single Nucleotide Polymorphisms of Human STING Can Affect Innate Immune Response to Cyclic Dinucleotides.
[PubMed ID: 24204993]
: SAPS stands for Statistical Analysis of Protein Sequences, and SSPA is an acronym for Significant Segment Pair Alignment. These programs are rather old (see citations), but still in use. I am making the old code available as is for now, hoping for some time soon to update the code. In the meantime, give me feedback and suggestions! Volker Brendel
, December 16, 2008.
: SAPS - Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA
89, 2002-2006. [PubMed ID: 1549558
]; SSPA - Karlin, S., Weinstock, G. & Brendel, V. (1995) Bacterial classifications derived from RecA protein sequence comparisons. J. Bacteriol.
177, 6881-6893. [PubMed ID: 7592482
: SAPS @ EBI
; SAPS @ Mobyle
: Download SAPS-SSPA