Standage, D.S. & Brendel, V.P. (2012)
ParsEval: parallel comparison and analysis of gene structure annotations.
[PubMed ID: 22852583]
Doyle, E.L., Booher, N.J., Standage, D.S., Voytas, D.F., Brendel, V.P., VanDyk, J.K. & Bogdanove, A.J. (2012)
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.
Nucl. Acids Res., 2012; doi: 10.1093/nar/gks608.
[PubMed ID: 22693217]
: SAPS stands for Statistical Analysis of Protein Sequences, and SSPA is an acronym for Significant Segment Pair Alignment. These programs are rather old (see citations), but still in use. I am making the old code available as is for now, hoping for some time soon to update the code. In the meantime, give me feedback and suggestions! Volker Brendel
, December 16, 2008.
: SAPS - Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA
89, 2002-2006. [PubMed ID: 1549558
]; SSPA - Karlin, S., Weinstock, G. & Brendel, V. (1995) Bacterial classifications derived from RecA protein sequence comparisons. J. Bacteriol.
177, 6881-6893. [PubMed ID: 7592482
: SAPS @ EBI
; SAPS @ Mobyle
: Download SAPS-SSPA