We have moved from Iowa State University (Ames, IA) to Indiana University (Bloomington, IN).
Thank you ISU for providing a home for almost 14 years.
Part of the group will continue at ISU for now, while new folks will join our efforts at IUB.
Collaborations will flourish beyond that with our many valued colleagues and friends in Ames.
Standage, D.S. & Brendel, V.P. (2012)
ParsEval: parallel comparison and analysis of gene structure annotations.
[PubMed ID: 22852583]
Doyle, E.L., Booher, N.J., Standage, D.S., Voytas, D.F., Brendel, V.P., VanDyk, J.K. & Bogdanove, A.J. (2012)
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.
Nucl. Acids Res., 2012; doi: 10.1093/nar/gks608.
[PubMed ID: 22693217]
plantgdb.org has moved to our new server at IU on Monday, July 23!
: SAPS stands for Statistical Analysis of Protein Sequences, and SSPA is an acronym for Significant Segment Pair Alignment. These programs are rather old (see citations), but still in use. I am making the old code available as is for now, hoping for some time soon to update the code. In the meantime, give me feedback and suggestions! Volker Brendel
, December 16, 2008.
: SAPS - Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA
89, 2002-2006. [PubMed ID: 1549558
]; SSPA - Karlin, S., Weinstock, G. & Brendel, V. (1995) Bacterial classifications derived from RecA protein sequence comparisons. J. Bacteriol.
177, 6881-6893. [PubMed ID: 7592482
: SAPS @ EBI
; SAPS @ Mobyle
: Download SAPS-SSPA