V. Brendel serving as Chair of the iPlant Collaborative Scientific Advisory Board
V. Brendel appointed Consulting Editor of The Plant Cell
Duvick, J., Standage, D.S., Merchant, N. & Brendel, V.P. (2016)
xGDBvm: A Web GUI-driven workflow for annotating eukaryotic genomes in the cloud.
The Plant Cell
[Advance Publication: 28 March 2016]
Standage, D.S., Berens, A.J., Glastad, K.M., Severin, A.J., Brendel, V.P. & Toth, A.L. (2016)
Genome, transcriptom and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylaiton system in a social insect.
[First published: 15 March 2016]
xGDBvm on YouTube
: SAPS stands for Statistical Analysis of Protein Sequences, and SSPA is an acronym for Significant Segment Pair Alignment. These programs are rather old (see citations), but still in use. I am making the old code available as is for now, hoping for some time soon to update the code. In the meantime, give me feedback and suggestions! Volker Brendel
, December 16, 2008.
: SAPS - Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA
89, 2002-2006. [PubMed ID: 1549558
]; SSPA - Karlin, S., Weinstock, G. & Brendel, V. (1995) Bacterial classifications derived from RecA protein sequence comparisons. J. Bacteriol.
177, 6881-6893. [PubMed ID: 7592482
: SAPS @ EBI
; SAPS @ Mobyle
: Download SAPS-SSPA