Selected Topics in Zoology (Section 34684):
Introduction to Computational Data Processing in Biology
Introduction to Computational Data Processing in Biology
BIOL 507 (Z620) Spring 2014
Course description
BIOL L507 ICDPB
Lecture times and locations
Mon, Wed 1:00p-2:15p, Lindley Hall (LH) 030
Tentative schedule
HTML version of this schedule
| DAY | DATE | LECTURE | TOPIC | LECTURER | Mon | Jan 13 | 1.1 | Orientation Introduction to computing environments to used in the class Some useful tutorials: SSH Linux Command Shell | Volker Brendel |
| Wed | Jan 15 | 2.1 | Perl for bioinformatics scripting: Introduction (Learning Perl, Chapter 1) Scalar Data (Learning Perl, Chapter 2) | Volker Brendel |
| Mon | Jan 20 | MLK Jr. Day | no class | |
| Wed | Jan 22 | 2.2 | Perl for bioinformatics scripting: Lists and Arrays (Learning Perl, Chapter 3) Hashes (Learning Perl, Chapter 5) | Volker Brendel |
| Mon | Jan 27 | 2.3 | Perl for bioinformatics scripting: Subroutines (Learning Perl, Chapter 4) | Volker Brendel |
| Wed | Jan 29 | 2.4 | Perl for bioinformatics scripting: I/O Basics (Learning Perl, Chapter 6) Filehandles and File Tests (Learning Perl, Chapter 11) | Volker Brendel |
| Mon | Feb 3 | 2.5 | Perl for bioinformatics scripting: Regular Expressions (Learning Perl, Chapters 7-9) | Volker Brendel |
| Wed | Feb 5 | 2.6 | Test (Perl) | Students |
| Mon | Feb 10 | 3.1 | R for statistical data analysis | Instructors |
| Wed | Feb 12 | 3.2 | Instructors | |
| Mon | Feb 17 | 3.3 | Instructors | |
| Wed | Feb 19 | 3.4 | Test (R) | Students |
| Mon | Feb 24 | 4.1 | Projects | Instructors |
| Wed | Feb 26 | 4.2 | Instructors | |
| Mon | Mar 3 | 4.3 | Instructors | |
| Wed | Mar 5 | 4.4 | Instructors | |
| Fri | Mar 7 | 11:59pm | Final Projects due | Students |